miRBase entry: cfa-mir-200a

Stem-loop cfa-mir-200a


Accession
MI0010362
Description
Canis familiaris cfa-mir-200a precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

cugggccucugugggCAUCUUACCGGACAGUGCUGGAuuucuuggcuugacucuaacacugucugguaacgauguucaaaggugacccac
.(((((.(((.(((((((((((((((((((((.((((..((.......)).)))).))))))))))))).)))))))).))).).)))).

Structure
c    - c   g        -             C    uu  uu 
 uggg c ucu ugggCAUC UUACCGGACAGUG UGGA  uc  g
 |||| | ||| |||||||| ||||||||||||| ||||  ||  g
 accc g gga acuuguag aauggucugucac aucu  ag  c
c    a u   a        c             a    -c  uu 


Annotation confidence Not enough data
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Genome context
chr5: 56369063-56369152 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cfa-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-200a

Accession MIMAT0009865
Description Canis familiaris cfa-miR-200a mature miRNA
Sequence 16 - CAUCUUACCGGACAGUGCUGGA - 37
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39