miRBase entry: cfa-mir-105b

Stem-loop cfa-mir-105b


Accession
MI0010378
Description
Canis familiaris cfa-mir-105b precursor miRNA
Gene family
MIPF0000074; mir-105


Sequence

ugugcaucauggUCAAAUGCUCAGACUCCUUGguggcugcuuaugcaccaugaauguuugagcaugugcuauggugucua
...(((((((((.((.((((((((((...((.((((.(((....))))))).)).)))))))))).)))))))))))...

Structure
ugu         U  A          UCC  G    c   u 
   gcaucaugg CA AUGCUCAGAC   UU gugg ugc u
   ||||||||| || ||||||||||   || |||| |||  
   ugugguauc gu uacgaguuug   aa uacc acg a
auc         -  g          --u  g    -   u 


Annotation confidence Not enough data
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Genome context
chrX: 120405349-120405428 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-105b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-105b

Accession MIMAT0010198
Description Canis familiaris cfa-miR-105b mature miRNA
Sequence 13 - UCAAAUGCUCAGACUCCUUG - 32
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39