miRBase entry: cfa-mir-539

Stem-loop cfa-mir-539


Accession
MI0010408
Description
Canis familiaris cfa-mir-539 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

uacuugaGGAGAAAUUAUCCUUGGUGUGUucgcuguguuugugaggaaucauacaaggacaauuucuuuuugagua
((((((((((((((((.(((((((((..(((((.......)))))....))).)))))).))))))))))))))))

Structure
                A      -   --UG     ug 
uacuugaGGAGAAAUU UCCUUG GUG    Uucgc  u
|||||||||||||||| |||||| |||    |||||  g
augaguuuuucuuuaa aggaac uac    gagug  u
                c      a   uaag     uu 


Annotation confidence Not enough data
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Genome context
chr8: 69276311-69276386 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from cfa-mir-539
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-539

Accession MIMAT0009909
Description Canis familiaris cfa-miR-539 mature miRNA
Sequence 8 - GGAGAAAUUAUCCUUGGUGUGU - 29
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39