miRBase entry: mtr-MIR1507

Stem-loop mtr-MIR1507


Accession
MI0010541
Description
Medicago truncatula mtr-MIR1507 precursor miRNA
Gene family
MIPF0000699; MIR1507

Literature search
4 open access papers mention mtr-MIR1507
(13 sentences)

Sequence

accauaaacuccaauuaaugugguguugaguAGAGUUGUAUGGAACGAAAGAUgggaauuucuuguugaauucuauucauucaauuuucccucCCUCGUUCCAUACAUCAUCUAGccaauacuguguuaacaauugucuuuggu
((((...((.....((((((((((((((..(((((.((((((((((((..((.(((((....(((.(((((...)))))..)))..)))))))..)))))))))))).).))))..)))))))))))))).....))...))))

Structure
    uaa  uccaa              ag    - U            AA  U     uuuc   -u     u 
acca   ac     uuaaugugguguug  uAGA G UGUAUGGAACGA  GA gggaa    uug  ugaau  
||||   ||     ||||||||||||||  |||| | ||||||||||||  || |||||    |||  ||||| c
uggu   ug     aauugugucauaac  AUCU C ACAUACCUUGCU  cu cccuu    aac  acuua  
    uuc  uuaac              cG    A U            CC  -     --uu   uu     u 


Annotation confidence Not enough data
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Genome context
chr4: 46264970-46265113 [+]

Database links

Mature mtr-miR1507-5p

Accession MIMAT0010030
Description Medicago truncatula mtr-miR1507-5p mature miRNA
Sequence 32 - AGAGUUGUAUGGAACGAAAGAU - 53
Evidence experimental
Illumina [1], Northern [1]

Mature mtr-miR1507-3p

Accession MIMAT0010031
Description Medicago truncatula mtr-miR1507-3p mature miRNA
Sequence 94 - CCUCGUUCCAUACAUCAUCUAG - 115
Evidence experimental
Illumina [1], Northern [1-2], 454 [2]

References

  1. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98

  2. PubMed ID: 19068109
    High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
    Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T
    BMC Genomics (2008) 9:593