Stem-loop osa-MIR1428f

Accession

MI0010548

Description

Oryza sativa osa-MIR1428f precursor miRNA

Literature search

5 open access papers mention osa-MIR1428f
(17 sentences)

Sequence

18172 reads, 122.0 reads per million, 118 experiments

ugcuuugcgAAUUCACAGGCCCUAUCUUGUGguaugaacuaaguacgcgaugauuucugguacguauugggggcuuaccaUAAGAUAAUGCCGUGAAUUCGuaaagcgu
.(((((((((((((((.(((..((((((((((((.(..((.((((((..((........)).)))))).))..).))))))))))))..))))))))))))))))))..

Structure

-u               A   CC            u aa  a      cg  gau 
  gcuuugcgAAUUCAC GGC  UAUCUUGUGgua g  cu aguacg  au   u
  ||||||||||||||| |||  |||||||||||| |  || ||||||  ||    
  cgaaauGCUUAAGUG CCG  AUAGAAUaccau c  gg uuaugc  ug   u
ug               -   UA            u gg  g      -a  guc 

Annotation confidence High

Genome context

7: 5451329-5451437 [-]

Mature osa-miR1428f-5p

• Accession: MIMAT0010043
• Description: Oryza sativa osa-miR1428f-5p mature miRNA
• Sequence: 10 - AAUUCACAGGCCCUAUCUUGUG - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR1428f-3p

• Accession: MIMAT0056102
• Description: Oryza sativa osa-miR1428f-3p mature miRNA
• Sequence: 81 - UAAGAUAAUGCCGUGAAUUCG - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930