Stem-loop osa-MIR2096

Accession

MI0010556

Description

Oryza sativa osa-MIR2096 precursor miRNA

Literature search

2 open access papers mention osa-MIR2096
(3 sentences)

Sequence

6 reads, 6 reads per million, 2 experiments

gacgccgcacUGCCGAUUUCCCCCUCGGGCGagccaucggagcgggggccguuggcucccaaagcagacgcgagaauucacugaaauuaccgcgccaucuuaucuccgcaaguugaagaauauaauucgggcgcaguaauuuuuagugaauucaugugucuacuacuacauaugucugcuugggagccaaccgcguuucgauggcucgCCUGAGGGGAAAUCGGCGGGAggcguuug
((((((...((((((((((((((.((((((((((((((((((((.((....(((((((((((.((((((....(((((((((((((((((.(((((...((((.((..((...))..))..))))....))))).)))).)))))))))))))((((((........))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))..))))))..

Structure

--      gca              C                    g  gccg           a      ----------------gcga             -    c     -auc    -c  cg  a 
  gacgcc   cUGCCGAUUUCCCC UCGGGCGagccaucggagcg gg    uuggcucccaa gcagac                    gaauucacugaaa uuac gcgcc    uuau  uc  ca  
  ||||||   |||||||||||||| |||||||||||||||||||| ||    ||||||||||| ||||||                    ||||||||||||| |||| |||||    ||||  ||  || g
  uugcgg   GGCGGCUAAAGGGG AGUCCgcucgguagcuuugc cc    aaccgaggguu cgucug                    cuuaagugauuuu aaug cgcgg    aaua  ag  gu  
gu      -AG              -                    g  ----           -      uauacaucaucaucugugua             u    a     gcuu    ua  aa  u 

Annotation confidence Not enough data

Genome context

Chr1: 6443388-6443624 [+]

Mature osa-miR2096-5p

• Accession: MIMAT0010056
• Description: Oryza sativa osa-miR2096-5p mature miRNA
• Sequence: 11 - UGCCGAUUUCCCCCUCGGGCG - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR2096-3p

• Accession: MIMAT0010057
• Description: Oryza sativa osa-miR2096-3p mature miRNA
• Sequence: 209 - CCUGAGGGGAAAUCGGCGGGA - 229
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930