miRBase entry: tca-mir-1000

Stem-loop tca-mir-1000


Accession
MI0010591
Description
Tribolium castaneum tca-mir-1000 precursor miRNA
Gene family
MIPF0000701; mir-1000


Sequence

acggcucggccaugAUAUUGUCCUGUCACAGCaguacugguuccgaguuaCUGCUGCUUCGGGACAUGACCAuggccgggccucuuggccgacgccgccc
..((((((((((((.(..(((((((...((((((((((.(...).)).))))))))...)))))))..).))))))))))))...((((....))))...UACAAGACUUAUAUCUCAUAAGUUACGGGUUUCGGGGCAUCGGAACCGAUUUUAAGCUGGUUCGUUGUCGACGAAACCUGCAGACUAUGGGACACA

Structure
Error: Sequence and structure lengths do not match for tca-mir-1000.


Annotation confidence Not enough data
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Genome context
ChLG2: 1618878-1618977 [+]

Database links

Mature tca-miR-1000-5p

Accession MIMAT0010097
Description Tribolium castaneum tca-miR-1000-5p mature miRNA
Sequence 15 - AUAUUGUCCUGUCACAGC - 32
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-1000-3p

Accession MIMAT0019184
Description Tribolium castaneum tca-miR-1000-3p mature miRNA
Sequence 51 - CUGCUGCUUCGGGACAUGACCA - 72
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696