Stem-loop sequence bmo-mir-965

Accession

MI0010623 (change log)

Description

Bombyx mori miR-965 stem loop

Gene family

MIPF0000708; mir-965

Literature search

5 open access papers mention bmo-mir-965
(8 sentences)

Stem-loop

   auauaaaug  -           ac             g    a    ucaau 
5'          gc ugcauagcuaa  gggagaagcuaua cgcu uaug     a
            || |||||||||||  ||||||||||||| |||| ||||     u
3'          cg acguauugguu  cccuuuucgauau gcga auac     u
   -cucuuaua  u           -c             -    -    uaaaa 

Deep sequencing

3838 reads, 533 reads per million, 3 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates: NW_004582012.1: 8411478-8411581 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010623

Mature sequence bmo-miR-965-5p

• Accession: MIMAT0015295
• Previous IDs: bmo-miR-965
• Sequence: 24 - cgggagaagcuauagcgcuauaug - 47
• Deep sequencing: 2785 reads, 3 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00002607A7_7091

Mature sequence bmo-miR-965-3p

• Accession: MIMAT0010126
• Previous IDs: bmo-miR-965;bmo-miR-965*
• Sequence: 63 - uaagcguauagcuuuuccccuu - 84
• Deep sequencing: 1052 reads, 3 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00001CA257_7091

References

1. " Griffiths-Jones S Unpublished (2009).
2. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).