Stem-loop sequence bmo-mir-274

Accession

MI0010624 (change log)

Description

Bombyx mori miR-274 stem loop

Gene family

MIPF0000264; mir-274

Literature search

3 open access papers mention bmo-mir-274
(16 sentences)

Stem-loop

   ggcuguu         a   g    -    c     cu       - g   u 
5'        guuaggcga guu guuu guga cguca  aacgggc a ugu a
          ||||||||| ||| |||| |||| |||||  ||||||| | |||  
3'        caguucgcu caa uaaa cgcu gcggu  uugcucg u gca a
   -------         -   g    a    a     -u       u g   u 

Deep sequencing

14627 reads, 2.4e+03 reads per million, 3 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates: NW_004581747.1: 1284148-1284242 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010624

Mature sequence bmo-miR-274-5p

• Accession: MIMAT0010127
• Previous IDs: bmo-miR-274
• Sequence: 22 - guuugugaccgucacuaacgggcagu - 47
• Deep sequencing: 14001 reads, 3 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00001BB474_7091

Mature sequence bmo-miR-274-3p

• Accession: MIMAT0015296
• Previous IDs: bmo-miR-274*
• Sequence: 62 - ucguuuuggcgaucgcaaaaug - 83
• Deep sequencing: 615 reads, 3 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000003CE66_7091

References

1. " Griffiths-Jones S Unpublished (2009).
2. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).