Stem-loop sequence bmo-mir-993b

Accession

MI0010625 (change log)

Description

Bombyx mori miR-993b stem loop

Gene family

MIPF0000033; mir-10

Literature search

1 open access papers mention bmo-mir-993b
(4 sentences)

Stem-loop

   ---------------------------------   a  uu      c    c      uc          uaaaa 
5'                                  ggc ca  cgugau uacc uguaga  cgggcuuucg     a
                                    ||| ||  |||||| |||| ||||||  ||||||||||      
3'                                  ccg gu  gcacua augg acaucu  gcucgaaagc     a
   gucaagaacugauuaacaucuuuuccaccgcac   -  cg      u    -      cu          uaaac 

Deep sequencing

477 reads, 33.3 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates: NW_004581721.1: 2625-2743 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010625

Mature sequence bmo-miR-993b-5p

• Accession: MIMAT0015297
• Previous IDs: bmo-miR-993b*
• Sequence: 16 - uacccuguagauccgggcuuucg - 38
• Deep sequencing: 450 reads, 3 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00003C4D65_7091

Mature sequence bmo-miR-993b-3p

• Accession: MIMAT0010128
• Previous IDs: bmo-miR-993b
• Sequence: 53 - aaagcucgucucuacagguauau - 75
• Deep sequencing: 27 reads, 2 experiments
• Evidence: experimental; Illumina [2]

References

1. " Griffiths-Jones S Unpublished (2009).
2. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).