Stem-loop ebv-mir-BART22

Accession

MI0010628

Description

Epstein Barr virus ebv-mir-BART22 precursor miRNA

Sequence

gucacaggugcuagacccuggaguugaaccaguaccacucggUUACAAAGUCAUGGUCUAGUAGUugugac
(((((((.(((((((((.(((..((((((((((...))).)))).)))..))).))))))))).)))))))

Structure

       g         c   ag   -    -   a 
gucacag ugcuagacc ugg  uug aacc agu  
||||||| ||||||||| |||  ||| |||| ||| c
caguguU AUGAUCUGG ACU  AAC UUgg uca  
       G         U   GA   A    c   c 

Annotation confidence Not enough data

Genome context

HHV507799: 147161-147231 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from ebv-mir-BART22

Disease association

ebv-mir-BART22 is associated with one or more human diseases in the Human microRNA Disease Database

Mature ebv-miR-BART22

• Accession: MIMAT0010132
• Description: Epstein Barr virus ebv-miR-BART22 mature miRNA
• Sequence: 43 - UUACAAAGUCAUGGUCUAGUAGU - 65
• Evidence: experimental ; RT-PCR [1], 454 [2], cloned [3], Northern [3]

References

1. PubMed ID: 19144710
   Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas
   "Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G"
   "J Virol (2009) 83:3333-3341


2. PubMed ID: 19881953
   Modulation of LMP2A expression by a newly identified Epstein-Barr virus-encoded microRNA miR-BART22
   "Lung RW, Tong JH, Sung YM, Leung PS, Ng DC, Chau SL, Chan AW, Ng EK, Lo KW, To KF"
   "Neoplasia (2009) 11:1174-1184


3. PubMed ID: 19091858
   Comprehensive profiling of Epstein-Barr virus microRNAs in nasopharyngeal carcinoma
   "Cosmopoulos K, Pegtel M, Hawkins J, Moffett H, Novina C, Middeldorp J, Thorley-Lawson DA"
   "J Virol (2009) 83:2357-2367