miRBase entry: ath-MIR2111a

Stem-loop ath-MIR2111a


Accession
MI0010630
Description
Arabidopsis thaliana ath-MIR2111a precursor miRNA
Gene family
MIPF0000754; MIR2111

Literature search
4 open access papers mention ath-MIR2111a
(12 sentences)

Sequence

cgaugaugaguauuggugaggaccgggUAAUCUGCAUCCUGAGGUUUAaagcuuaauuuacgcaggaaauuuguauacgcauauacguauguguauuaguauaccuuuuaGUCCUCGGGAUGCGGAUUACCucguucuuacuuacaauacacguacucg
(((..(((.((((((((((((((.((((((((((((((((((((.(((((((.........)).........((((((..((((((....))))))..))))))..))))).)))))))))))))))))))).))))))))...)))))).)))..)))

Structure
   ug   a      ---        c                    U     gcuuaauuuacgcaggaaauuu      gc      g 
cga  aug guauug   gugaggac gggUAAUCUGCAUCCUGAGG UUAaa                      guauac  auauac u
|||  ||| ||||||   |||||||| |||||||||||||||||||| |||||                      ||||||  ||||||  
gcu  ugc cauaac   cauucuug uCCAUUAGGCGUAGGGCUCC Gauuu                      cauaug  uaugug a
   ca   a      auu        c                    U     --------------------uc      au      u 


Annotation confidence Not enough data
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Genome context
chr3: 2854284-2854442 [+]

Database links

Mature ath-miR2111a-5p

Accession MIMAT0011150
Description Arabidopsis thaliana ath-miR2111a-5p mature miRNA
Sequence 28 - UAAUCUGCAUCCUGAGGUUUA - 48
Evidence experimental
Illumina [1-3]

Mature ath-miR2111a-3p

Accession MIMAT0011151
Description Arabidopsis thaliana ath-miR2111a-3p mature miRNA
Sequence 111 - GUCCUCGGGAUGCGGAUUACC - 131
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 19307293
    Computational and analytical framework for small RNA profiling by high-throughput sequencing
    "Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC"
    "RNA (2009) 15:992-1002

  2. PubMed ID: 19465578
    Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing
    "Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR"
    "Plant Physiol (2009) 150:1541-1555

  3. PubMed ID: 19854858
    Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
    "Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ"
    "Plant Physiol (2009) 151:2120-2132