Stem-loop bra-MIR171b

Accession

MI0010657

Description

Brassica rapa bra-MIR171b precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

7 open access papers mention bra-MIR171b
(12 sentences)

Sequence

uggucaagcgagauauuagugcgguucaaucaaauagucucacucuuaguugauagagauugauuuuguucgaUUGAGCCGUGCCAAUAUCACGcauauaacca
((((...(((.((((((.(((((((((((((.(((((..(((.((((........)))).)))..))))).))))))))))))).)))))).))).....))))

Structure

    --caa   a      a             a     uc   c    agu 
uggu     gcg gauauu gugcgguucaauc aauag  uca ucuu   u
||||     ||| |||||| ||||||||||||| |||||  ||| ||||    
acca     cGC CUAUAA CGUGCCGAGUUag uuguu  agu agag   g
    auaua   A      C             c     uu   u    aua 

Annotation confidence Not enough data

Genome context

chrA9: 34811767-34811870 [+]

Mature bra-miR171b

• Accession: MIMAT0010162
• Description: Brassica rapa bra-miR171b mature miRNA
• Sequence: 74 - UUGAGCCGUGCCAAUAUCACG - 94
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452


2. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146