miRBase entry: bra-MIR171c

Stem-loop bra-MIR171c


Accession
MI0010658
Description
Brassica rapa bra-MIR171c precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
7 open access papers mention bra-MIR171c
(10 sentences)

Sequence

gcgagauauuagugcgguucaaucaaauagucguacucuuagcuauuagagaucgguuuuguucgaUUGAGCCGUGCCAAUAUCACGc
(((.((((((.(((((((((((((.((((((((..((((........))))..)))..))))).))))))))))))).)))))).)))

Structure
   a      a             a     --   ua    uag 
gcg gauauu gugcgguucaauc aauag  ucg  cucu   c
||| |||||| ||||||||||||| |||||  |||  ||||    
cGC CUAUAA CGUGCCGAGUUag uuguu  ggc  gaga   u
   A      C             c     uu   ua    uua 


Annotation confidence Not enough data
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Genome context
chrA8: 20120996-20121083 [+]

Database links

Mature bra-miR171c

Accession MIMAT0010163
Description Brassica rapa bra-miR171c mature miRNA
Sequence 67 - UUGAGCCGUGCCAAUAUCACG - 87
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 18558089
    Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
    "He XF, Fang YY, Feng L, Guo HS"
    "FEBS Lett (2008) 582:2445-2452