Stem-loop bra-MIR171d

Accession

MI0010659

Description

Brassica rapa bra-MIR171d precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

7 open access papers mention bra-MIR171d
(10 sentences)

Sequence

gguaacgcgagauauuagugcgguucaaucaaauagucguguucucacuugauagagaucgguuuuguucgaUUGAGCCGUGCCAAUAUCACGcgucaacc
(((.(((((.((((((.(((((((((((((.(((((...((.((((........)))).))...))))).))))))))))))).)))))).)))))..)))

Structure

   -a     a      a             a     ucg  u    acu 
ggu  acgcg gauauu gugcgguucaauc aauag   ug ucuc   u
|||  ||||| |||||| ||||||||||||| |||||   || ||||    
cca  ugcGC CUAUAA CGUGCCGAGUUag uuguu   gc agag   g
   ac     A      C             c     uug  u    aua 

Annotation confidence Not enough data

Genome context

chrA6: 4092008-4092108 [-]

Mature bra-miR171d

• Accession: MIMAT0010164
• Description: Brassica rapa bra-miR171d mature miRNA
• Sequence: 73 - UUGAGCCGUGCCAAUAUCACG - 93
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452