Stem-loop bra-MIR172b

Accession

MI0010662

Description

Brassica rapa bra-MIR172b precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

14 open access papers mention bra-MIR172b
(50 sentences)

Sequence

uguagguGCAGCACCAUUAAGAUUCACAuggaaauugagaaaacccuaauuuauauuaauuaggguucugauauguauaugAGAAUCUUGAUGAUGCUGCAUcaaca
(((.(((((((((.(((((((((((.((((.....(.(((..(((((((((......)))))))))))).)......)))).))))))))))).))))))))).)))

Structure

   a         C           A    -gaaau g   aa         ua 
ugu gguGCAGCA CAUUAAGAUUC CAug      u aga  acccuaauu  u
||| ||||||||| ||||||||||| ||||      | |||  |||||||||   
aca cUACGUCGU GUAGUUCUAAG guau      a ucu  ugggauuaa  a
   a         A           A    auguau g   --         uu 

Annotation confidence Not enough data

Genome context

Unknown

Mature bra-miR172b-5p

• Accession: MIMAT0010167
• Description: Brassica rapa bra-miR172b-5p mature miRNA
• Sequence: 8 - GCAGCACCAUUAAGAUUCACA - 28
• Evidence: experimental ; cloned [1], Northern [1]

Mature bra-miR172b-3p

• Accession: MIMAT0010168
• Description: Brassica rapa bra-miR172b-3p mature miRNA
• Sequence: 82 - AGAAUCUUGAUGAUGCUGCAU - 102
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452