Stem-loop sequence sma-bantam

Accession

MI0010675 (change log)

Description

Schistosoma mansoni bantam stem-loop

Literature search

8 open access papers mention sma-bantam
(45 sentences)

Stem-loop

   -  c  gu       u      c   g   aa  u 
5'  gg aa  cggcuuu auugcg ucu aga  au u
    || ||  ||||||| |||||| ||| |||  || a
3'  cc uu  gucgaaa uagcgc aga ucu  ug u
   a  u  ug       u      u   g   ac  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WTSI5): SC_0137: 369443-369514 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010675

Mature sequence sma-bantam-5p

• Accession: MIMAT0032104
• Sequence: 8 - cggcuuuuauugcgcucugaga - 29
• Evidence: experimental; Illumina [2], SOLiD [2]

Mature sequence sma-bantam-3p

• Accession: MIMAT0010182
• Previous IDs: sma-bantam
• Sequence: 45 - ugagaucgcgauuaaagcuggu - 66
• Evidence: experimental; Illumina [2], SOLiD [2]

References

1. PMID:19107204 "Identification and characterization of novel microRNAs from Schistosoma japonicum" Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W PLoS One. 3:e4034(2008).
2. PMID:24069470 "Sex-biased expression of microRNAs in Schistosoma mansoni" Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M PLoS Negl Trop Dis. 7:e2402(2013).