Stem-loop sequence ssc-mir-124a-1

Accession

MI0010680 (change log)

Description

Sus scrofa miR-124a-1 stem-loop

Gene family

MIPF0000021; mir-124

Literature search

15 open access papers mention ssc-mir-124a-1
(80 sentences)

Stem-loop

        ac   ------a      c  cc        a   ga        uaau 
5' ucaag  cag       cucugc cu  guguucac gcg  ccuugauu    g
   |||||  |||       |||||| ||  |||||||| |||  ||||||||    u
3' aguuc  guc       gaggcg ga  cguaagug cgc  ggaauuaa    c
        ac   ggcaucc      a  ac        g   ac        caua 

Deep sequencing

13 reads, 0 reads per million, 6 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Sscrofa10.2; GCA_000003025.4)	Overlapping transcripts
chr4: 76136453-76136557 [-]	intergenic
chrUScaf3700: 125788-125892 [-]	intergenic

Database links

• EntrezGene:MIR124A-1
• miRBase Tracker:MI0010680

Mature sequence ssc-miR-124a

• Accession: MIMAT0002156
• Sequence: 59 - uaaggcacgcggugaaugcca - 79
• Deep sequencing: 26 reads, 6 experiments
• Evidence: experimental; 454 [1], Illumina [2]

References

1. PMID:19196471 "Cloning, characterization and expression analysis of porcine microRNAs" Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R BMC Genomics. 10:65(2009).
2. PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).