miRBase entry: ssc-mir-146b

Stem-loop ssc-mir-146b


Accession
MI0010685
Description
Sus scrofa ssc-mir-146b precursor miRNA
Gene family
MIPF0000103; mir-146

Literature search
21 open access papers mention ssc-mir-146b
(116 sentences)

Sequence

147 reads, 179 reads per million, 12 experiments
gaacuuuggccaccuggcucUGAGAACUGAAUUCCAUAGGCugugagcucuagcaaaugcccuaggaacucaguucuggugcccggcugugcuauaguc
..(((.((((((((.(((.((.((((((((.((((.((((.(((..((....))..))).)))))))).)))))))))).))).)).)).)))).))).

Structure
ga   u    -  -  u   u  G        A    A    C   ga  u 
  acu uggc ca cc ggc cU AGAACUGA UUCC UAGG ugu  gc c
  ||| |||| || || ||| || |||||||| |||| |||| |||  ||  
  uga aucg gu gg ccg gg ucuugacu aagg aucc gua  cg u
-c   u    u  c  c   u  -        c    -    c   aa  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr14: 123301752-123301850 [+]

Database links

Mature ssc-miR-146b

Accession MIMAT0010190
Description Sus scrofa ssc-miR-146b mature miRNA
Sequence 21 - UGAGAACUGAAUUCCAUAGGC - 41
Evidence experimental
454 [1], Illumina [2-4]

References

  1. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100