Stem-loop ssc-mir-215

Accession

MI0010687

Description

Sus scrofa ssc-mir-215 precursor miRNA

Gene family

MIPF0000063; mir-192

Literature search

13 open access papers mention ssc-mir-215
(57 sentences)

Sequence

agagaugguguacaggaaaAUGACCUAUGAAUUGACAGACaauguggcuaaaucugucugucauuucuguaggccaauauucuguauaucucugcu
..(((.(((((((((((...((.((((((((.(((((((((((........)).))))))))).))).))))).))...))))))))))))))...

Structure

-ag   u           aaA  A     -   U         -  gug 
   aga gguguacagga   UG CCUAU GAA UGACAGACa au   g
   ||| |||||||||||   || ||||| ||| ||||||||| ||    
   ucu cuauaugucuu   ac ggaug cuu acugucugu ua   c
ucg   -           aua  c     u   u         c  aau 

Annotation confidence Not enough data

Genome context

chr10: 11786567-11786662 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-215

Mature ssc-miR-215

• Accession: MIMAT0010192
• Description: Sus scrofa ssc-miR-215 mature miRNA
• Sequence: 20 - AUGACCUAUGAAUUGACAGAC - 40
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19196471
   Cloning, characterization and expression analysis of porcine microRNAs
   Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
   BMC Genomics (2009) 10:65


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328