Stem-loop sequence mdm-MIR482a

Accession

MI0010695 (change log)

Previous IDs

mdm-MIR482

Description

Malus domestica miR482a stem-loop

Gene family

MIPF0000403; MIR482

Literature search

4 open access papers mention mdm-MIR482a
(10 sentences)

Stem-loop

       --a            gauu     u          u           -u            rgaaaa        au 
5' gaga   gagggaaaggga    ggagc gcuggaaguu uaggaaugggc  guuugggaagaa      uuacaaga  a
   ||||   ||||||||||||    ||||| |||||||||| |||||||||||  ||||||||||||      ||||||||  a
3' cucu   uucccuuucccu    ccuug cgaccuuuag auccuuacccg  cgaacccuucuu      gguguucu  u
       aug            ----     u          u           cc            ---ugg        gu 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates: MDC002407.840: 1569-1723 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010695

Mature sequence mdm-miR482a-5p

• Accession: MIMAT0011164
• Previous IDs: mdm-miR482*
• Sequence: 40 - aggaaugggcuguuugggaaga - 61
• Evidence: not experimental

Mature sequence mdm-miR482a-3p

• Accession: MIMAT0011165
• Previous IDs: mdm-miR482
• Sequence: 98 - uucccaagcccgcccauuccua - 119
• Evidence: experimental; miRNAseq [2]

References

1. PMID:19353277 "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress" Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL Plant Mol Biol. 70:385-401(2009).
2. PMID:22704043 "Apple miRNAs and tasiRNAs with novel regulatory networks" Xia R, Zhu H, An YQ, Beers EP, Liu Z Genome Biol. 13:R47(2012).