Stem-loop sequence mtr-MIR159a

Accession

MI0010696 (change log)

Description

Medicago truncatula miR159a stem-loop

Gene family

MIPF0000010; MIR159

Literature search

2 open access papers mention mtr-MIR159a
(34 sentences)

Stem-loop

   ------- gg                      uau    cuu    -u u      a   g     c      uc  u   cu     -  ucuu 
5'        g  guggagcuuccuuuaguccaaa   ggau   gcua  g ugauag gcu cuuag uauggg  cc caa  cuacc ca    g
          |  ||||||||||||||||||||||   ||||   ||||  | |||||| ||| ||||| ||||||  || |||  ||||| ||     
3'        c  caucucgagggaaguuagguuu   ucua   ugau  c acuauu cga ggauc auaccu  gg guu  gaugg gu    u
   ucucguu ua                      cuu    auu    uu c      c   g     u      uc  u   uu     u  uucu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): AC233685.2: 18309-18491 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010696

Mature sequence mtr-miR159a

• Accession: MIMAT0011166
• Sequence: 152 - uuuggauugaagggagcucua - 172
• Evidence: not experimental

References

1. PMID:19353277 "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress" Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL Plant Mol Biol. 70:385-401(2009).