miRBase entry: pvu-MIR166a

Stem-loop pvu-MIR166a


Accession
MI0010704
Description
Phaseolus vulgaris pvu-MIR166a precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
3 open access papers mention pvu-MIR166a
(13 sentences)

Sequence

cuugcaaaggugagguugagaggaauguugucuggcucgaggucauggaggaggagaguucucagauaaacucuuucacccaaaguuuccaauggaaauuuacccucuaacaccaaaaugauucUCGGACCAGGCUUCAUUCCCCccacccaacuuuugcuauu
...((((((((..(((.(.(.((((((..((((((.(((((((((((((((.((((((((........))))))))......((((((((...))))))))..))))).........)))).)))))).))))))..)))))).)).)))..))))))))....

Structure
-cuu        ga   u a a      uu      c      -    ---------     --------------------------a        cuc 
    gcaaaggu  ggu g g ggaaug  gucugg ucgagg ucau         ggagg                           ggagaguu   a
    ||||||||  ||| | | ||||||  |||||| |||||| ||||         |||||                           ||||||||    
    cguuuuca  cca c C CCUUAC  CGGACC GGCUcu agua         ucucc                           uuucucaa   g
uuau        ac   c - C      UU      A      u    aaaccacaa     cauuuaaagguaaccuuugaaacccac        aua 


Annotation confidence Not enough data
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Genome context
chr2: 44066654-44066817 [-]

Database links

Mature pvu-miR166a

Accession MIMAT0011175
Description Phaseolus vulgaris pvu-miR166a mature miRNA
Sequence 125 - UCGGACCAGGCUUCAUUCCCC - 145
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 19353277
    Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress
    "Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL"
    "Plant Mol Biol (2009) 70:385-401