Stem-loop pvu-MIR399a

Accession

MI0010706

Description

Phaseolus vulgaris pvu-MIR399a precursor miRNA

Literature search

8 open access papers mention pvu-MIR399a
(38 sentences)

Sequence

ugcacaagauauuauagucaauaagcaaaccaguuauagggcuucucuuuguuggcaggaaaugacaugaccacuucaugaaauaucuUGCCAAAGGAGAGUUGCCCUGuugcugcuuuagcuuaauauguaaucuucuaugcuauucagugcauaugaucauucacuccauugaagagaagcacugaaguaguaugcaagggaucaaacaaaugacuucauc
.......(((......))).....(((.((.(.((.(((.(((((((((((.(((.((..((((((((((.....)))))..............((((((.((((..(((((..((....)).))))).))))))))))((((........))))....)))))..))))).))))))))))).))))).).)).)))..(((.(((......))).)))...

Structure

-ugcacaagauauuauagucaauaa   a  c g  a   g           u   c  ga     caugaccacuucaugaaauaucuUGCCAA      G    CC     cu  u 
                         gca ac a uu uag gcuucucuuug ugg ag  aauga                             AGGAGA UUGC  UGuug  gc u
                         ||| || | || ||| ||||||||||| ||| ||  |||||                             |||||| ||||  |||||  ||  
                         cgu ug u aa guc cgaagagaagu acc uc  uuacu                             ucuucu aaug  auaau  cg u
cuacuucaguaaacaaacuagggaa   a  a g  -   a           u   -  ac     ---------aguauacgugacuuaucgua      -    -u     -u  a 

Annotation confidence Low

Genome context

chr7: 5883859-5884081 [-]

Mature pvu-miR399a

• Accession: MIMAT0011177
• Description: Phaseolus vulgaris pvu-miR399a mature miRNA
• Sequence: 89 - UGCCAAAGGAGAGUUGCCCUG - 109
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 19353277
   Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress
   "Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL"
   "Plant Mol Biol (2009) 70:385-401