miRBase entry: osa-MIR2121a

Stem-loop osa-MIR2121a


Accession
MI0010709
Description
Oryza sativa osa-MIR2121a precursor miRNA
Gene family
MIPF0000765; MIR2121

Literature search
1 open access papers mention osa-MIR2121a
(1 sentences)

Sequence

132 reads, 115 reads per million, 2 experiments
gugcuaaucuaucgcuccguuuuccgugcggaacacagccgcggccuuaggcuguguucccaucuaccagaugggaacucauuuccccugcacggAAAACGGAGCGGUCCAUUAGCGCGu
((((((((..(((((((((((((((((((((.((((((((.........))))))))((((((((...))))))))...........)))))))))))))))))))))..))))))))..

Structure
--        cu                     -----------------------------a        gcg 
  gugcuaau  aucgcuccguuuuccgugcgg                              acacagcc   g
  ||||||||  |||||||||||||||||||||                              ||||||||   c
  CGCGAUUA  UGGCGAGGCAAAAggcacguc                              ugugucgg   c
uG        CC                     cccuuuacucaaggguagaccaucuacccu        auu 


Annotation confidence Not enough data
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Comments
Huang et al. incorrectly named this sequence miR602 in [1].

Genome context
Chr1: 16373428-16373547 [+]

Database links

Mature osa-miR2121a

Accession MIMAT0011180
Description Oryza sativa osa-miR2121a mature miRNA
Sequence 96 - AAAACGGAGCGGUCCAUUAGCGCG - 119
Evidence experimental
cloned [1]
Database links

References

  1. PubMed ID: 19081140
    Heavy metal-regulated new microRNAs from rice
    "Huang SQ, Peng J, Qiu CX, Yang ZM"
    "J Inorg Biochem (2009) 103:282-287