Stem-loop sequence gma-MIR167f

Accession

MI0010726 (change log)

Description

Glycine max miR167f stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

26 open access papers mention gma-MIR167f
(187 sentences)

Stem-loop

         -a  ----     c  u           g        uaa   c  u  c 
5' ucaugc  cc    acuac ag ugaagcugcca caugaucu   cuu cc ca u
   ||||||  ||    ||||| || ||||||||||| ||||||||   ||| || || u
3' aguacg  gg    ugaug uc acuuugacggu guacuaga   gaa gg gu g
         cc  uugu     a  c           -        cua   a  u  c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr10: 47144841-47144949 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR167f

• gma-MIR167h: chr10: 47144854-47144942 [+]
• gma-MIR167f: chr10: 47144841-47144949 [-]

Database links

• miRBase Tracker:MI0010726

Mature sequence gma-miR167f

• Accession: MIMAT0011197
• Sequence: 19 - ugaagcugccagcaugaucuu - 39
• Evidence: experimental; cloned [1], Northern [1]

References

1. PMID:19084500 "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules" Wang Y, Li P, Cao X, Wang X, Zhang A, Li X Biochem Biophys Res Commun. 378:799-803(2009).