miRBase entry: gma-MIR172d

Stem-loop gma-MIR172d


Accession
MI0010728
Description
Glycine max gma-MIR172d precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
29 open access papers mention gma-MIR172d
(128 sentences)

Sequence

aaaacagucgcugauugcagauggagcaucaucaagauucacaagcuucagggguuuuuuguuugggguggucccuuauugcucccaaaugaauuaagcccuuugauaugGGAAUCUUGAUGAUGCUGCAGCAGcaauaaacgacuaaca
.....(((((...(((((...((.((((((((((((((((.((....(((((((((((((((((((((((((.....))))).))))))))))..)))))).))))..)).)))))))))))))))).))...)))))...)))))....

Structure
aaaac     cug     aga  g                a  agcu    -      --          -     c 
     agucg   auugc   ug agcaucaucaagauuc ca    ucag ggguuu  uuuguuuggg guggu c
     |||||   |||||   || |||||||||||||||| ||    |||| ||||||  |||||||||| ||||| c
     ucagc   uaacG   AC UCGUAGUAGUUCUAAG gu    aguu cccgaa  aaguaaaccc cguua u
-acaa     aaa     ACG  G                G  --au    u      uu          u     u 


Annotation confidence Not enough data
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Genome context
chr14: 5659819-5659968 [+]

Database links

Mature gma-miR172d

Accession MIMAT0011199
Description Glycine max gma-miR172d mature miRNA
Sequence 111 - GGAAUCUUGAUGAUGCUGCAGCAG - 134
Evidence experimental
cloned [1], Northern [1], SOLiD [2]

References

  1. PubMed ID: 19084500
    Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
    "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
    "Biochem Biophys Res Commun (2009) 378:799-803

  2. PubMed ID: 21751852
    Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
    "Radwan O, Liu Y, Clough SJ"
    "Mol Plant Microbe Interact (2011) 24:958-972