Stem-loop sequence gga-mir-2131

Accession

MI0010736 (change log)

Description

Gallus gallus miR-2131 stem-loop

Gene family

MIPF0001631; mir-2131

Literature search

2 open access papers mention gga-mir-2131
(3 sentences)

Stem-loop

      c ug        g      ugc    a       guuu   au 
5' ucu g  gcuuccau cagaag   acgg aacagcu    gcu  c
   ||| |  |||||||| ||||||   |||| |||||||    |||  g
3' agg c  cggaggua gucuuc   uguc uugucgg    uga  a
      u gu        -      --u    a       ---u   aa 

Deep sequencing

10161 reads, 80 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chrZ: 70743817-70743905 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000003255 ; NCBP1-201; intron 20

Clustered miRNAs

< 10kb from gga-mir-2131

• gga-mir-2131: chrZ: 70743817-70743905 [-]
• gga-mir-1583: chrZ: 70734341-70734438 [+]

Database links

• EntrezGene:MIR2131
• miRBase Tracker:MI0010736

Mature sequence gga-miR-2131-5p

• Accession: MIMAT0011207
• Sequence: 14 - augcagaagugcacggaaacagcu - 37
• Deep sequencing: 545 reads, 5 experiments
• Evidence: experimental; Illumina [1-2], Northern [1]
• Predicted targets:
  • TargetScanVert:gga-miR-2131-5p
  • miRDB:gga-miR-2131-5p

Mature sequence gga-miR-2131-3p

• Accession: MIMAT0026920
• Sequence: 58 - cuguuacuguucuucugaugg - 78
• Deep sequencing: 9602 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-2131-3p
  • miRDB:gga-miR-2131-3p

References

1. PMID:19328789 "High throughput sequencing of microRNAs in chicken somites" Rathjen T, Pais H, Sweetman D, Moulton V, Munsterberg A, Dalmay T FEBS Lett. 583:1422-1426(2009).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).