miRBase entry: sme-mir-2148

Stem-loop sme-mir-2148


Accession
MI0010764
Description
Schmidtea mediterranea sme-mir-2148 precursor miRNA


Sequence

guaaguaaccaguuuaucagAGAAAUUCUGUGGUCUUGAUUguaaaugauauuAUACUGGCCCACAAAAUUUCUUUuauuaaacguuugaacuuca
(.((((.....(((((..(((((((((.(((((.((....(((((......)))))..)).))))).)))))))))...)))))......))))).

Structure
- u    -aacca     -uc         C     U  UGAU     au 
 g aagu      guuua   agAGAAAUU UGUGG CU    Uguaa  g
 | ||||      |||||   ||||||||| ||||| ||    |||||   
 c uuca      caaau   UUUCUUUAA ACACC GG    AUAuu  a
a -    aguuug     uau         A     C  --UC     au 


Annotation confidence Not enough data
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Genome context
Contig12516: 6907-7002 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sme-mir-2148
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sme-miR-2148-5p

Accession MIMAT0011224
Description Schmidtea mediterranea sme-miR-2148-5p mature miRNA
Sequence 21 - AGAAAUUCUGUGGUCUUGAUU - 41
Evidence experimental
454 [1], Illumina [1-2]

Mature sme-miR-2148-3p

Accession MIMAT0012131
Description Schmidtea mediterranea sme-miR-2148-3p mature miRNA
Sequence 54 - AUACUGGCCCACAAAAUUUCUUU - 76
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491