miRBase entry: sme-mir-2147a

Stem-loop sme-mir-2147a


Accession
MI0010770
Description
Schmidtea mediterranea sme-mir-2147a precursor miRNA
Gene family
MIPF0000751; mir-2147


Sequence

ucuucuuuggaugccaacggCGGAAGACUCGCACGUGACauugcuaauuuuuuccauuucacugcgaguguucccgcguugauuccaauucucauca
......(((((...(((((..((((.(((((((.((((....................))))))))))).))))..)))))..))))).........

Structure
---ucuucu     ugc     gC    G       C    Cauugcuaa 
         uugga   caacg  GGAA ACUCGCA GUGA         u
         |||||   |||||  |||| ||||||| ||||          
         aaccu   guugc  ccuu ugagcgu cacu         u
acuacucuu     -ua     gc    g       -    uuaccuuuu 


Annotation confidence Not enough data
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Genome context
Contig8045: 2945-3041 [-]

Database links

Mature sme-miR-2147a

Accession MIMAT0011230
Description Schmidtea mediterranea sme-miR-2147a mature miRNA
Sequence 21 - CGGAAGACUCGCACGUGAC - 39
Evidence experimental
454 [1], Illumina [1]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551