miRBase entry: sme-mir-2151

Stem-loop sme-mir-2151


Accession
MI0010772
Description
Schmidtea mediterranea sme-mir-2151 precursor miRNA


Sequence

ugcuuaagagaacucuuuaCAGAUCAUGUUAAGUGGAAUUUGAUaacaGAUUGCACUCAAUAUGGUCAGAUuagcuuucucucaacagca
((((..((((((..((.....(((((((((.((((.((((((....)))))).)))).))))))))).....))..))))))....))))

Structure
    --ua      cu  uuaCA         A    G      A 
ugcu    agagaa  cu     GAUCAUGUU AGUG AAUUUG U
||||    ||||||  ||     ||||||||| |||| ||||||  
acga    ucucuu  ga     CUGGUAUAA UCAC UUAGac a
    caac      uc  uUAGA         C    G      a 


Annotation confidence Not enough data
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Genome context
Contig2742: 61491-61580 [+]

Database links

Mature sme-miR-2151-5p

Accession MIMAT0012135
Description Schmidtea mediterranea sme-miR-2151-5p mature miRNA
Sequence 20 - CAGAUCAUGUUAAGUGGAAUUUGAU - 44
Evidence experimental
454 [1], Illumina [1-2]

Mature sme-miR-2151-3p

Accession MIMAT0011232
Description Schmidtea mediterranea sme-miR-2151-3p mature miRNA
Sequence 49 - GAUUGCACUCAAUAUGGUCAGAU - 71
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491