miRBase entry: sme-mir-87d

Stem-loop sme-mir-87d


Accession
MI0010775
Description
Schmidtea mediterranea sme-mir-87d precursor miRNA


Sequence

uuacauuguuuuagaauuauAAUGUCUUAUAUUUUGCUAUUAUCauuguuucaaugaaaaugGUGAGCAAAGUUUAAGACAUUCauauuuugaaauuuucuuccu
.......((((((((((...(((((((((.((((((((((((((((((...))))))...)))).)))))))).)))))))))...)))))))))).........

Structure
--uuacauu          uau         U        -    ---      u 
         guuuuagaau   AAUGUCUUA AUUUUGCU AUUA   UCauug  
         ||||||||||   ||||||||| |||||||| ||||   |||||| u
         uaaaguuuua   UUACAGAAU UGAAACGA UGgu   aguaac  
uccuucuuu          uaC         U        G    aaa      u 


Annotation confidence Not enough data
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Genome context
Contig19991: 5071-5175 [+]

Database links

Mature sme-miR-87d-5p

Accession MIMAT0012136
Description Schmidtea mediterranea sme-miR-87d-5p mature miRNA
Sequence 21 - AAUGUCUUAUAUUUUGCUAUUAUC - 44
Evidence experimental
454 [1], Illumina [1-2]

Mature sme-miR-87d-3p

Accession MIMAT0011235
Description Schmidtea mediterranea sme-miR-87d-3p mature miRNA
Sequence 63 - GUGAGCAAAGUUUAAGACAUUC - 84
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491