miRBase entry: sme-mir-9b

Stem-loop sme-mir-9b


Accession
MI0010787
Description
Schmidtea mediterranea sme-mir-9b precursor miRNA


Sequence

acaaaugucaaaucaagauuUCUUUGGUUGUUUAGCUAUAUGAaugucuagguCAUAUACUGCAUAAUCAAAGUUGucugauuugaguaagcuucc
.......((((((((.(((..((((((((((.(((.(((((((.........)))))))))).))))))))))..)))))))))))..........

Structure
---acaaaug        a   uU          U   C       aug 
          ucaaauca gau  CUUUGGUUGU UAG UAUAUGA   u
          |||||||| |||  |||||||||| ||| |||||||   c
          aguuuagu cuG  GAAACUAAUA GUC AUAUACu   u
ccuucgaaug        -   UU          C   -       gga 


Annotation confidence Not enough data
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Genome context
Contig1910: 62759-62854 [+]

Database links

Mature sme-miR-9b-5p

Accession MIMAT0011247
Description Schmidtea mediterranea sme-miR-9b-5p mature miRNA
Sequence 21 - UCUUUGGUUGUUUAGCUAUAUGA - 43
Evidence experimental
454 [1], Illumina [1-2]

Mature sme-miR-9b-3p

Accession MIMAT0012145
Description Schmidtea mediterranea sme-miR-9b-3p mature miRNA
Sequence 54 - CAUAUACUGCAUAAUCAAAGUUG - 76
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491