miRBase entry: sme-mir-2163

Stem-loop sme-mir-2163


Accession
MI0010797
Description
Schmidtea mediterranea sme-mir-2163 precursor miRNA


Sequence

auuacgagauuuuauuuucaUAACUUGAUAGAUAUAUGCAUCaacgagauuugcuauuauuuugUUGCAUAGUCUAUUAAGUUGGUcgaaaugauuuuaaucguca
...((((((..(((((((..(((((((((((((.((((((...(((((((........))))))))))))))))))))))))))...)))))))..))..))))..

Structure
auu    --  uu       -ca             A      UCa       uug 
   acga  ga  uuauuuu   UAACUUGAUAGAU UAUGCA   acgagau   c
   ||||  ||  |||||||   ||||||||||||| ||||||   |||||||    
   ugcu  uu  aguaaag   GUUGAAUUAUCUG AUACGU   Uguuuua   u
-ac    aa  uu       cUG             -      ---       uua 


Annotation confidence Not enough data
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Genome context
Contig21390: 5654-5759 [+]

Database links

Mature sme-miR-2163-5p

Accession MIMAT0012154
Description Schmidtea mediterranea sme-miR-2163-5p mature miRNA
Sequence 21 - UAACUUGAUAGAUAUAUGCAUC - 42
Evidence experimental
454 [1], Illumina [1-2]

Mature sme-miR-2163-3p

Accession MIMAT0011257
Description Schmidtea mediterranea sme-miR-2163-3p mature miRNA
Sequence 65 - UUGCAUAGUCUAUUAAGUUGGU - 86
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491