miRBase entry: sme-mir-2166

Stem-loop sme-mir-2166


Accession
MI0010804
Description
Schmidtea mediterranea sme-mir-2166 precursor miRNA


Sequence

auaugaaaucuauuuuucucuagaauaaaacagauaaccaaucauguugcaguugaaucugaUUGGUCACUUGCUUUAUUCACUCauaaaucuaaauuaaauagc
....((((......))))....(((((((.(((...((((((((.(((.......))).))))))))...))).)))))))........................

Structure
--auaugaaaucuauuuuucucua       a   aua        u   gc 
                        gaauaaa cag   accaauca guu  a
                        ||||||| |||   |||||||| |||  g
                        CUUAUUU GUU   UGGUUagu uaa  u
cgauaaauuaaaucuaaauaCUCA       C   CAC        c   gu 


Annotation confidence Not enough data
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Genome context
Contig110: 125557-125661 [+]

Database links

Mature sme-miR-2166

Accession MIMAT0011263
Description Schmidtea mediterranea sme-miR-2166 mature miRNA
Sequence 63 - UUGGUCACUUGCUUUAUUCACUC - 85
Evidence experimental
454 [1], Illumina [1]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551