miRBase entry: sme-mir-2147c

Stem-loop sme-mir-2147c


Accession
MI0010813
Description
Schmidtea mediterranea sme-mir-2147c precursor miRNA
Gene family
MIPF0000751; mir-2147


Sequence

uuguuuugcuguaauaacggCGGAAAACUCGCUCGUGCCAUCGUcgucuucacgaugucacggcagguguucccacguuaaucccaauuuuccuca
..............(((((..((((.(((.((.((((.((((((.(....))))))).)))))).))).))))..)))))................

Structure
--uuguuuugcuguaa     gC    A   C  U    C      c u 
                uaacg  GGAA ACU GC CGUG CAUCGU g c
                |||||  |||| ||| || |||| |||||| |  
                auugc  ccuu ugg cg gcac guagca c u
acuccuuuuaacccua     ac    g   a  -    u      - u 


Annotation confidence Not enough data
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Genome context
Contig960: 86908-87003 [-]

Database links

Mature sme-miR-2147c

Accession MIMAT0011270
Description Schmidtea mediterranea sme-miR-2147c mature miRNA
Sequence 21 - CGGAAAACUCGCUCGUGCCAUCGU - 44
Evidence experimental
454 [1], Illumina [1]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551