miRBase entry: sme-mir-2175

Stem-loop sme-mir-2175


Accession
MI0010820
Description
Schmidtea mediterranea sme-mir-2175 precursor miRNA


Sequence

cuauugguagccaugauguuauuugcaauaaaauaucaguaaaaugacauuacuaagaauuuuauuuuUACUGAAUGUCUUUUUGCAAAUUGAcaaugcuacuuggcccauua
.....((((((.((..((((((((((((.((.(((((((((((((((.(((......))).))).)))))))).)))).)).))))))).)))))))))))))..........

Structure
-----cuauu      c  ga     -       u  a    -        -   c   ac 
          gguagc au  uguua uuugcaa aa auau caguaaaa uga auu  u
          |||||| ||  ||||| ||||||| || |||| |||||||| ||| |||   
          ucaucg ua  acAGU AAACGUU UU UGUA GUCAUuuu auu uaa  a
auuacccggu      -  --     U       U  C    A        u   u   ga 


Annotation confidence Not enough data
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Genome context
Contig5899: 29810-29922 [-]

Database links

Mature sme-miR-2175

Accession MIMAT0011276
Description Schmidtea mediterranea sme-miR-2175 mature miRNA
Sequence 69 - UACUGAAUGUCUUUUUGCAAAUUGA - 93
Evidence experimental
454 [1], Illumina [1]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551