miRBase entry: sme-mir-2176

Stem-loop sme-mir-2176


Accession
MI0010823
Description
Schmidtea mediterranea sme-mir-2176 precursor miRNA


Sequence

ugaucaaaagcaaaaccuuugugaaucggauuguucuucaguuaAGAACAUUCUGAUUCACAAagguuuugcuucuuaucaca
((((...(((((((((((((((((((((((.(((((((.....))))))).)))))))))))))))))))))))...))))..

Structure
--    caa                       u       c 
  ugau   aagcaaaaccuuugugaaucgga uguucuu a
  ||||   ||||||||||||||||||||||| ||||||| g
  acua   uucguuuuggaAACACUUAGUCU ACAAGAa u
ac    uuc                       U       u 


Annotation confidence Not enough data
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Genome context
Contig11012: 8126-8208 [-]

Database links

Mature sme-miR-2176

Accession MIMAT0011278
Description Schmidtea mediterranea sme-miR-2176 mature miRNA
Sequence 45 - AGAACAUUCUGAUUCACAA - 63
Evidence experimental
454 [1], Illumina [1]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551