miRBase entry: sbi-MIR164e

Stem-loop sbi-MIR164e


Accession
MI0010866
Description
Sorghum bicolor sbi-MIR164e precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
5 open access papers mention sbi-MIR164e
(13 sentences)

Sequence

guUGGAGAAGCAGGGCACGUGCAgagacacgccggccggagcacggccgccgccgauagaucgaccucgcacucgcacucgcacaccagcugcgucugcguguggaugaggucgagaucgucgucggucgaagcuagcgaggaaccucuugcuuguugcuucacccgcuagcuccugcacugcacgugcuccccuucuccaccau
(.((((((((..((((((((((((.....((.((((((.....)))))).)).((((...((((((((((((.((((..(((((....).))))..)))).)))..))))))))).))))..((.(((.(((((.((((((.((....)).)))))))))))))).))..((....)).))))))))))))..)))))))).)..

Structure
-- u        CA            ------------------------------agacacgccggccggagcacggccgccgc    aga         --   u    cu    - a 
  g UGGAGAAG  GGGCACGUGCAg                                                           cgau   ucgaccucg  cac cgca  cgca c c
  | ||||||||  ||||||||||||                                                           ||||   |||||||||  ||| ||||  |||| |  
  c accucuuc  cucgugcacguc                                                           gcua   agcuggagu  gug gcgu  gcgu g c
ua c        cc            acguccucgaucgcccacuucguuguucguucuccaaggagcgaucgaagcuggcugcu    --g         ag   u    cu    c a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr9: 44994962-44995166 [+]

Database links

Mature sbi-miR164e

Accession MIMAT0011326
Description Sorghum bicolor sbi-miR164e mature miRNA
Sequence 3 - UGGAGAAGCAGGGCACGUGCA - 23
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556