miRBase entry: sbi-MIR166h

Stem-loop sbi-MIR166h


Accession
MI0010867
Description
Sorghum bicolor sbi-MIR166h precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
5 open access papers mention sbi-MIR166h
(11 sentences)

Sequence

aggggaauguugucuggcucgggggcgccgccgcuccgcuccgcuccuuccuucucuggucucucucucuccccuagucuucgcgcgcuuccucaaucuccaucgucucuuccuccuucucuuggagaccagcaggaggacggaggcgggugguguagaucUCGGACCAGGCUUCAUUCCCccca
.((((((((..((((((.((((((....((((((.((((....((((.((((((((((((((((...........................................................))))))))).))))))).))))))))))))))....)))))).))))))..))))))))...

Structure
--a        uu      c      gcgc      u    uccg    u       -         cucucuccccuagucuucgcgcgcuucc 
   ggggaaug  gucugg ucgggg    cgccgc ccgc    cucc uccuucu cuggucucu                            u
   ||||||||  |||||| ||||||    |||||| ||||    |||| ||||||| |||||||||                            c
   cCCCUUAC  CGGACC GGCUcu    guggug ggcg    gagg aggagga gaccagagg                            a
acc        UU      A      agau      -    ----    c       c         uucucuuccuccuucucugcuaccucua 


Annotation confidence Not enough data
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Genome context
chr10: 60095470-60095654 [-]

Database links

Mature sbi-miR166h

Accession MIMAT0011327
Description Sorghum bicolor sbi-miR166h mature miRNA
Sequence 162 - UCGGACCAGGCUUCAUUCCC - 181
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556