miRBase entry: sbi-MIR169m

Stem-loop sbi-MIR169m


Accession
MI0010878
Description
Sorghum bicolor sbi-MIR169m precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
4 open access papers mention sbi-MIR169m
(23 sentences)

Sequence

UAGCCAAGGAUGACUUGCCUAuauccucucuaaaggaucagcaaauauugaggcuucuaguggucucauaugggcagucuccuuggcuagcc
((((((((((.((((.(((((((((((......))))...........(((((((......))))))))))))))))))))))))))))...

Structure
---          U    U       uccucucuaaaggaucagcaaauau       uc 
   UAGCCAAGGA GACU GCCUAua                         ugaggcu  u
   |||||||||| |||| |||||||                         |||||||   
   aucgguuccu cuga cggguau                         acucugg  a
ccg          -    -       -------------------------       ug 


Annotation confidence Not enough data
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Genome context
chr7: 62252290-62252381 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from sbi-MIR169m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR169m

Accession MIMAT0011338
Description Sorghum bicolor sbi-miR169m mature miRNA
Sequence 1 - UAGCCAAGGAUGACUUGCCUA - 21
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556