miRBase entry: sbi-MIR172d

Stem-loop sbi-MIR172d


Accession
MI0010885
Description
Sorghum bicolor sbi-MIR172d precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
4 open access papers mention sbi-MIR172d
(30 sentences)

Sequence

uggcaucaucaagauucacaacccauggauccaaauaaaccacugauuuggaucgaggagaugcaugAGAAUCUUGAUGAUGCUGCAu
.((((((((((((((((.((.(((.(.(((((((((.........))))))))).))).).)).....))))))))))))))))....

Structure
---u                ----a  a -  a g         aaa 
    ggcaucaucaagauuc     ca c cc u gauccaaau   c
    ||||||||||||||||     || | || | |||||||||   c
    UCGUAGUAGUUCUAAG     gu g gg a cuagguuua   a
uACG                Aguac  a a  - g         guc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature sbi-miR172d

Accession MIMAT0011345
Description Sorghum bicolor sbi-miR172d mature miRNA
Sequence 68 - AGAAUCUUGAUGAUGCUGCA - 87
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556