miRBase entry: sbi-MIR395g

Stem-loop sbi-MIR395g


Accession
MI0010891
Description
Sorghum bicolor sbi-MIR395g precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
4 open access papers mention sbi-MIR395g
(30 sentences)

Sequence

guucccuaaaagcacuucacgagaccuuggcuuaauaaagggcccuuGUGAAGUGUUUGGGGGAACUC
(((((((..((((((((((((((.....(((((......))))))))))))))))))).)))))))..

Structure
--       aa              accuu     aa 
  guucccu  aagcacuucacgag     ggcuu  u
  |||||||  ||||||||||||||     |||||   
  CAAGGGG  UUUGUGAAGUGuuc     ccggg  a
CU       -G              -----     aa 


Annotation confidence Not enough data
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Genome context
chr6: 57784324-57784391 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from sbi-MIR395g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR395g

Accession MIMAT0011351
Description Sorghum bicolor sbi-miR395g mature miRNA
Sequence 48 - GUGAAGUGUUUGGGGGAACUC - 68
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556