miRBase entry: sbi-MIR395i

Stem-loop sbi-MIR395i


Accession
MI0010893
Description
Sorghum bicolor sbi-MIR395i precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
4 open access papers mention sbi-MIR395i
(30 sentences)

Sequence

guucccugcaaacacuucacaagcuagaccauauauaguaugcccuugcacaaugugguauccaguuaccuagcuaGUGAAGUGUUUGGGGGAACUC
(((((((.((((((((((((.(((((((((((((...(((......)))...)))))))..........)))))).)))))))))))))))))))..

Structure
--       g            a      ----------       aua   ug 
  guucccu caaacacuucac agcuag          accauau   gua  c
  ||||||| |||||||||||| ||||||          |||||||   |||   
  CAAGGGG GUUUGUGAAGUG ucgauc          uggugua   cgu  c
CU       -            a      cauugaccua       aca   uc 


Annotation confidence Not enough data
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Genome context
chr7: 4623362-4623458 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from sbi-MIR395i
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR395i

Accession MIMAT0011353
Description Sorghum bicolor sbi-miR395i mature miRNA
Sequence 77 - GUGAAGUGUUUGGGGGAACUC - 97
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556