Stem-loop sequence sbi-MIR395k

Accession

MI0010895 (change log)

Description

Sorghum bicolor miR395k stem-loop

Gene family

MIPF0000016; MIR395

Literature search

4 open access papers mention sbi-MIR395k
(30 sentences)

Stem-loop

   --     c                gaagcuucacauuggc 
5'   guucc uucaagcacuucacau                a
     ||||| ||||||||||||||||                g
3'   caagg agguuugugaagugua                a
   cu     -                accagaguucugaugu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr7: 4623715-4623794 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sbi-MIR395k

• sbi-MIR395i: chr7: 4623362-4623458 [+]
• sbi-MIR395j: chr7: 4623545-4623631 [+]
• sbi-MIR395k: chr7: 4623715-4623794 [+]
• sbi-MIR395l: chr7: 4624021-4624104 [+]

Database links

• miRBase Tracker:MI0010895

Mature sequence sbi-miR395k

• Accession: MIMAT0011355
• Sequence: 60 - gugaaguguuuggaggaacuc - 80
• Evidence: by similarity; MI0001033

References

1. PMID:19189423 "The Sorghum bicolor genome and the diversification of grasses" Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare Nature. 457:551-556(2009).