miRBase entry: sbi-MIR396d

Stem-loop sbi-MIR396d


Accession
MI0010897
Description
Sorghum bicolor sbi-MIR396d precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
3 open access papers mention sbi-MIR396d
(13 sentences)

Sequence

CUCCACAGGCUUUCUUGAACUGugaacucgaucgcgugcucuuagcuugcuugcucucgcucgcuuuguguugaugguucaagaaaguccuuggaa
.((((..((((((((((((((((.(((.(((..(((.((....(((......)))...)).))).))).))).))))))))))))))))..)))).

Structure
C    CA                g   u   uc   u  ucuu   uu 
 UCCA  GGCUUUCUUGAACUGu aac cga  gcg gc    agc  g
 ||||  |||||||||||||||| ||| |||  ||| ||    |||   
 aggu  cugaaagaacuuggua uug guu  cgc cg    ucg  c
a    uc                g   u   -u   u  -cuc   uu 


Annotation confidence Not enough data
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Genome context
chr4: 68279979-68280074 [-]

Database links

Mature sbi-miR396d

Accession MIMAT0011357
Description Sorghum bicolor sbi-miR396d mature miRNA
Sequence 1 - CUCCACAGGCUUUCUUGAACUG - 22
Evidence not_experimental

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716