miRBase entry: sme-mir-2156b

Stem-loop sme-mir-2156b


Accession
MI0010933
Description
Schmidtea mediterranea sme-mir-2156b precursor miRNA


Sequence

uucauaacugaaaAAGGUUUUUGAGCCGUAAAUCAaaauaauauuugCCUUACGGCCCCUAAACCUUAUUucugaaaugaau
(((((....(((((((((((..(.(((((((..((((......))))..))))))).)..))))))).))))....))))).

Structure
-     aacu    -       UU A       AU    au 
 uucau    gaaa AAGGUUU  G GCCGUAA  CAaa  a
 |||||    |||| |||||||  | |||||||  ||||   
 aagua    cuUU UUCCAAA  C CGGCAUU  guuu  a
u     aagu    A       UC C       CC    au 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Contig877: 48519-48600 [+]

Database links

Mature sme-miR-2156b-5p

Accession MIMAT0011393
Description Schmidtea mediterranea sme-miR-2156b-5p mature miRNA
Sequence 14 - AAGGUUUUUGAGCCGUAAAUCA - 35
Evidence experimental
Illumina [1]

Mature sme-miR-2156b-3p

Accession MIMAT0011394
Description Schmidtea mediterranea sme-miR-2156b-3p mature miRNA
Sequence 48 - CCUUACGGCCCCUAAACCUUAUU - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491