miRBase entry: sme-mir-2205

Stem-loop sme-mir-2205


Accession
MI0010942
Description
Schmidtea mediterranea sme-mir-2205 precursor miRNA


Sequence

ccucuuaguuguguUGGAUAGUGAGUAAAGCGGUGAuaguuucaacaucaaUCUGUAUUUCUCAUCUUCCCAcgaucgauuaau
....((((((((((.(((..(((((.((.((((((((.((....))))))..)))).)).)))))..))).)))..))))))).

Structure
ccuc       --   U   UA     U  A    --    a  u 
    uuaguug  ugu GGA  GUGAG AA GCGG  UGAu gu u
    |||||||  ||| |||  ||||| || ||||  |||| ||  
    aauuagc  gcA CCU  UACUC UU UGUC  acua ca c
---u       ua   C   UC     U  A    Ua    -  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Contig5365: 28923-29006 [-]

Database links

Mature sme-miR-2205-5p

Accession MIMAT0011408
Description Schmidtea mediterranea sme-miR-2205-5p mature miRNA
Sequence 15 - UGGAUAGUGAGUAAAGCGGUGA - 36
Evidence experimental
Illumina [1]

Mature sme-miR-2205-3p

Accession MIMAT0011409
Description Schmidtea mediterranea sme-miR-2205-3p mature miRNA
Sequence 52 - UCUGUAUUUCUCAUCUUCCCA - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491