miRBase entry: cel-mir-2210

Stem-loop cel-mir-2210


Accession
MI0010960
Description
Caenorhabditis elegans cel-mir-2210 precursor miRNA

Literature search
1 open access papers mention cel-mir-2210
(1 sentences)

Sequence

418 reads, 7 reads per million, 8 experiments
AGGCAGAUCAAUCAAUUUUUAGGuuuauauaaauaauccUAAAGUCGAUUGCUCUACCCAC
.((.(((.(((((...(((((((.((((....)))).)))))))..))))).))).))...

Structure
--A  C   U     AAU       u    a 
   GG AGA CAAUC   UUUUAGG uuau u
   || ||| |||||   ||||||| ||||  
   CC UCU GUUAG   GAAAUcc aaua a
CAC  A   C     -CU       u    a 


Annotation confidence Not enough data
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Genome context
chrIV: 10914618-10914678 [+]

Database links

Mature cel-miR-2210-5p

Accession MIMAT0011435
Description Caenorhabditis elegans cel-miR-2210-5p mature miRNA
Sequence 1 - AGGCAGAUCAAUCAAUUUUUAGG - 23
Evidence experimental
Illumina [1], CLIPseq [2]
Database links
Predicted targets

Mature cel-miR-2210-3p

Accession MIMAT0011436
Description Caenorhabditis elegans cel-miR-2210-3p mature miRNA
Sequence 40 - UAAAGUCGAUUGCUCUACCCAC - 61
Evidence experimental
Illumina [1], CLIPseq [2]
Database links

References

  1. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  2. PubMed ID: 20062054
    Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
    "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
    "Nat Struct Mol Biol (2010) 17:173-179