Stem-loop cel-mir-2209b

Accession

MI0010969

Description

Caenorhabditis elegans cel-mir-2209b precursor miRNA

Gene family

MIPF0000787; mir-2209

Literature search

1 open access papers mention cel-mir-2209b
(1 sentences)

Sequence

49 reads, 2 reads per million, 3 experiments

AGUGUAACAACUCUUCUCCUUCcgaaaaccaauaaucgagaAGAGAUGAGCGGUUGUGCUUCA
((((((((..(((.((((.((((((..........))).))))))).)))..))))))))...

Structure

---        AA   U    C   -   aaac 
   AGUGUAAC  CUC UCUC UUC cga    c
   ||||||||  ||| |||| ||| |||     
   UCGUGUUG  GAG AGAG Aag gcu    a
ACU        GC   U    -   a   aaua 

Annotation confidence Not enough data

Genome context

chrIV: 1021303-1021365 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cel-mir-2209b

Mature cel-miR-2209b-5p

• Accession: MIMAT0011453
• Description: Caenorhabditis elegans cel-miR-2209b-5p mature miRNA
• Sequence: 1 - AGUGUAACAACUCUUCUCCUUC - 22
• Evidence: experimental ; Illumina [1]

Mature cel-miR-2209b-3p

• Accession: MIMAT0011454
• Description: Caenorhabditis elegans cel-miR-2209b-3p mature miRNA
• Sequence: 42 - AGAGAUGAGCGGUUGUGCUUCA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54